Semester 2 (Spring) · Week 17 (teaching week 16 of 16)May 10–14

Transformation, antibiotic selection, plasmid extraction, digest, gel interpretation.

Your PLTW coursework: Biomedical InnovationProblem 6: Molecular Biology in Action ▸ "Project 6.1.2 Construction and Cloning of Recombinant DNA"

What to do if absent
Color keyLearn firstGet orientedDo the workLab daySafety netCheck yourself
Portal terms
CER:
Claim, Evidence, Reasoning: make a claim, back it with evidence, explain your reasoning.
SOP:
Standard Operating Procedure, the exact steps to follow (especially in a lab).
Tracker:
Your PLTW progress log where you record completed evidence.
myPLTW:
The PLTW course site where you do the online activities. Find it in Clever with your Microsoft sign-in, right next to Schoology.
Learn first

Week overview - Transformation and Gels: selection, digests, and reading the bands

May 10–14

Interpret a with selection, then read a restriction digest run on a gel against a .

Week arc
  1. 1Review the provided plate images and identify which plate shows successful .
  2. 2Explain in one sentence how selection lets only transformed colonies grow.
  3. 3Count the colonies on the selection plate and record the number in your notebook.
  4. 4Examine the provided gel image and locate the lane.
  5. 5Compare your sample bands to the ladder and estimate each fragment size.
  6. 6Write one sentence stating whether the digest matches the expected pattern.
By week end
  • You will be able to identify successful using selection plates.
  • You will be able to use a to estimate fragment sizes.
  • You will be able to judge whether a gel matches an expected digest pattern.
The plan

Daily lessons this week

Open any day for its full lesson, the work due that day, and guided notes.

MondayMon, May 10
Notebook submit

Complete and gel laboratory notebook: transformation notes, plate counts with units, gel , fragment-size estimates with units, conclusion on identity, one error source, and one future improvement.

TuesdayTue, May 11
Research ethics debate

One sentence on the consequence of a broken , plus a written ethical standard statement for your own independent project.

WednesdayWed, May 12

Evidence for

ThursdayThu, May 13
Forensic evidence table

evidence table with each item, collector, date and location of collection, all custody transfers with dates and handlers, storage and sealing method, and flagged documentation gaps.

FridayFri, May 14
Project question

Independent project definition: , testable claim, methods outline with identified variables and measurement units, a designated control, and one named limitation.

Get oriented

Quick intro to the week

  • Hook: a glowing plate and a few bands on a gel can confirm that you successfully moved a gene into bacteria.
  • Today's goal: read real selection plates and gels like a working molecular biologist.
  • Monday bioethics debate connects: how should labs contain genetically modified bacteria safely?
  • Reminder: your graded gel interpretation is submitted on the class site.
Do the work

Your PLTW coursework this week

Do this: Advance your PLTW molecular biology problem by completing your and gel interpretation in the online course shell.

Know when done
  • selection allows only transformed cells carrying the resistance gene to grow.
  • A provides known fragment sizes for comparison on a gel.
Be able to do
  • Identify successful from selection plates.
  • Estimate DNA fragment sizes against a ladder on a gel.

📋 PLTW evidence due: a plate interpretation and an annotated gel analysis with fragment sizes in the course shell.

All PLTW activities are completed inside the PLTW course environment: this page only gives direction.

The plan

This week's PLTW tracker

Use this chart to keep your place. Nothing on it is turned in through the portal.

DayWorkTurn in
Monday · Mon, May 10Notebook submitComplete transformation and gel laboratory notebook: transformation notes, plate colony counts with units, gel standard curve, fragment-size estimates with units, conclusion on plasmid identity, one error source, and one future improvement.
Tuesday · Tue, May 11Research ethics debateOne sentence on the consequence of a broken chain of custody, plus a written ethical standard statement for your own independent project.
Wednesday · Wed, May 12Evidence for
Thursday · Thu, May 13Forensic evidence tableForensic evidence table with each item, collector, date and location of collection, all custody transfers with dates and handlers, storage and sealing method, and flagged documentation gaps.
Friday · Fri, May 14Project questionIndependent project definition: researchable question, testable claim, methods outline with identified variables and measurement units, a designated control, and one named limitation.
  • M: biotech debate
  • T:
  • Th: gel map
  • F: notebook submit

Turn in: Transformation, antibiotic selection, plasmid extraction, digest, gel interpretation. weekly work due Transformation and gel notebook.

Go to Schoology to turn this in.

Submit one PDF. Put your first and last name in the document header. Name the file: FirstName LastName - Assignment Title - YYYY-MM-DD.pdf.

Open Schoology PDF upload help

If you cannot get in, see Mr. Mendoza. Do not skip the work.

The week, drawn

4 panels from the illustrated semester.

Fiction. There is no such student. The lessons, labs and dates are the real planned course; the student, the classmates and the conversations are invented.

Lab day

Lab day: what to bring & watch

Equipment you'll need
Provided transformation plate imagesGel electrophoresis chamber and power supplyAgarose gelDNA ladder standardRestriction digest samplesMicropipettes and tipsGel staining and imaging setup
Learn.Genetics (University of Utah): gel electrophoresis

This explainer accompanies the PLTW lab protocol: watch it before lab.

Safety net

What to do when absent

If YOU are absent

Most days, this class is your PLTW coursework: and PLTW is online and individual. So being out usually just means doing exactly what we did in class, from home.

Open Clever, then myPLTW

Sign in to Clever with your district Microsoft account to open Schoology or myPLTW. Follow today's posted steps. If myPLTW will not open, use the posted alternative and tell Mr. Mendoza. Turn in your completed work through the Schoology assignment.

Was today a lab or a group activity?

You can't do those from home: do this instead: Provided plate and gel images.

If MR. MENDOZA is absent

Class still runs. A substitute will post today's plan: complete the online activity above; it's built to be self-guided. Need the concept taught without a teacher? Use this authoritative explainer:

Learn.Genetics (University of Utah): gel electrophoresis
Words

Vocabulary

/trans-for-MAY-shun/
Explore

Teacher-posted resources

Classroom documents for this lesson are posted in Schoology. Open Clever, then Schoology, and find each one by the name shown on its card.

Catch-up / reteachFor: Need extra support
BI 6.1.2 Cloning Module 2 Transformation Overview
worksheet/handoutPosted in Schoology
Open in Schoology

Use this if you were absent, got stuck, or need another pass before you submit the lesson artifact.

Placement rationale

Matched , , molecular evidence by path:Biomedical-Innovations/Problem-6_Molecular-Biology/6.1_Molecular-Biology; keywords:transformation, , molecular. Score 146. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

Catch-up / reteachFor: Need extra support
BI 6.1.2 Module I Restriction Enzyme Gel Results
worksheet/handoutPosted in Schoology
Open in Schoology

Use this if you were absent, got stuck, or need another pass before you submit the lesson artifact.

Placement rationale

Matched , , molecular evidence by path:Biomedical-Innovations/Problem-6_Molecular-Biology/6.1_Molecular-Biology; keywords:gel, molecular. Score 142. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

Catch-up / reteachFor: Need extra support
BI 6.1.2 Module II Control and Transformation Plates
worksheet/handoutPosted in Schoology
Open in Schoology

Use this if you were absent, got stuck, or need another pass before you submit the lesson artifact.

Placement rationale

Matched , , molecular evidence by path:Biomedical-Innovations/Problem-6_Molecular-Biology/6.1_Molecular-Biology; keywords:transformation, molecular. Score 142. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

Sign in to Clever with your district Microsoft account to open Schoology or myPLTW. Follow today's posted steps. If myPLTW will not open, use the posted alternative and tell Mr. Mendoza. Turn in your completed work through the Schoology assignment.

Aligned to

Standards this week

Biotechnology for Health and Disease 072125 · 5.4 Molecular and Genetic Technology
Biotechnology for Health and Disease 072125 · 5.3 Microbiology Testing and Technology
Check yourself

WebXam practice

Tap an answer to check it · nothing is recorded or graded
To ensure preservation of incubated, refrigerated, and frozen reagents used in transformation and gel work, what must you closely monitor?
Before using an analytical balance to weigh agarose, a performance check shows the standard's mass reads too low. What is the next step?
What should you check to be sure a centrifuge used for a plasmid extraction is ready and safe to use?
After a restriction digest, you separate the DNA fragments on a gel. A reference lane of fragments of known sizes is included to estimate the sizes of your bands. This reference is the: