Semester 2 (Spring) · Week 14 of 16 teaching weeksApr 30–May 3

Recombinant DNA workflow, restriction enzymes, ligation, transformation safety.

Your PLTW coursework: Biomedical InnovationProblem 6: Molecular Biology in Action ▸ "Activity 6.1.1 Restriction Enzyme Challenge"

What to do if absent
Color keyLearn firstGet orientedDo the workLab daySafety netCheck yourself
Portal terms
CER:
Claim, Evidence, Reasoning: make a claim, back it with evidence, explain your reasoning.
SOP:
Standard Operating Procedure, the exact steps to follow (especially in a lab).
Tracker:
Your PLTW progress log where you record completed evidence.
myPLTW:
The PLTW course site where you do the online activities. Find it in Clever with your Microsoft sign-in, right next to Schoology.
Learn first

Week overview - Recombinant DNA Workflow: cutting, joining, and moving genes safely

Apr 30–May 3

Map the from cut through ligation and , and set up the practices that make it possible.

Week arc
  1. 1In your notebook, list the steps in order: cut, join, insert, grow.
  2. 2Define , , , and in your own words.
  3. 3Draw a and mark where a would cut to open it.
  4. 4Show how joins a gene of interest into the opened .
  5. 5Run the virtual cloning and record each step you complete.
  6. 6List two practices required when working with engineered organisms.
By week end
  • You will be able to sequence the steps.
  • You will be able to explain the role of restriction enzymes and .
  • You will be able to state practices for cloning work.
The plan

Daily lessons this week

Open any day for its full lesson, the work due that day, and guided notes.

FridayFri, Apr 30
Engineered organism debate

One sentence stating whether engineered-organism benefit justifies biosafety risk, with a specific reason grounded in containment or patient benefit.

MondayMon, May 3
Workflow notes and controls

outline with four ordered steps, named or reagent for each, specificity explanation, and positive/ identification with rationale.

Get oriented

Quick intro to the week

  • Hook: scientists can cut a gene from one organism and paste it into another, and today you learn how that is done safely.
  • Today's goal: walk the full cloning and the rules that surround it.
  • Monday bioethics debate fits: should there be limits on engineering organisms for human use?
  • Reminder: your graded cloning is submitted on the class site.
Do the work

Your PLTW coursework this week

Do this: Advance your PLTW molecular biology problem by completing the and plan in the online course shell.

Know when done
  • Restriction enzymes cut DNA at specific sequences and joins fragments.
  • A carries a gene of interest into a competent host cell.
Be able to do
  • Sequence the steps of a .
  • State the practices for working with engineered organisms.

📋 PLTW evidence due: a completed diagram and a cloning plan in the course shell.

All PLTW activities are completed inside the PLTW course environment: this page only gives direction.

The plan

This week's PLTW tracker

Your week at a glance. Check off each deliverable as you finish it, then submit so Mr. Mendoza can see how the class is pacing.

Use the code Mr. Mendoza gave you, not your name. Saved on this device.

DayDateFocusKey deliverable
FridayFri, Apr 30Engineered organism debate One sentence stating whether engineered-organism benefit justifies biosafety risk, with a specific reason grounded in containment or patient benefit.
MondayMon, May 3Workflow notes and controls Recombinant DNA workflow outline with four ordered steps, named enzyme or reagent for each, restriction enzyme specificity explanation, and positive/negative control identification with safety rationale.
Check off as you finish
  • M: engineered organism debate and workflow notes
  • T: control rationale
  • W–F: no school

Due by week's end: Molecular workflow plan.

Where are you this week?0/3 checked
Pick your period and code first.
The week, drawn

2 panels from the illustrated semester.

Fiction. There is no such student. The lessons, labs and dates are the real planned course; the student, the classmates and the conversations are invented.

Lab day

Lab day: what to bring & watch

Equipment you'll need
Micropipettes and sterile tipsPlasmid DNA sampleRestriction enzyme and bufferDNA ligaseCompetent cellsMicrocentrifuge tubesPersonal protective equipment
Learn.Genetics (University of Utah): cloning and recombinant DNA

This explainer accompanies the PLTW lab protocol: watch it before lab.

Safety net

What to do when absent

If YOU are absent

Most days, this class is your PLTW coursework: and PLTW is online and individual. So being out usually just means doing exactly what we did in class, from home.

Open Clever, then myPLTW

How to get there: open Clever and sign in with your Microsoft (district) account. Both myPLTW and Schoology are in Clever. Do the activity in myPLTW. Turn the work in on this site or hand it to Mr. Mendoza, because that is the step that counts as submitted. Schoology only shows your report-card grade later.

Was today a lab or a group activity?

You can't do those from home: do this instead: Virtual cloning .

If MR. MENDOZA is absent

Class still runs. A substitute will post today's plan: complete the online activity above; it's built to be self-guided. Need the concept taught without a teacher? Use this authoritative explainer:

Learn.Genetics (University of Utah): cloning and recombinant DNA
Words

Vocabulary

recombinant DNArestriction enzymeligaseplasmidcompetent cell
Explore

Teacher-posted resources

Classroom documents for this lesson are posted in Schoology. Open Clever, then Schoology, and find each one by the name shown on its card.

Use during lessonFor: Everyone
BI Problem 6 Molecular Biology - Complete Module
worksheet/handoutPosted in Schoology
Open in Schoology

Open this when the class reaches this activity and use it to complete the required lesson artifact.

Placement rationale

Matched Molecular biology and cloning by path:Biomedical-Innovations/Problem-6_Molecular-Biology/00_Problem-Overview; keywords:molecular biology, . Score 146. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

Use during lessonFor: Everyone
BI 6.1.2 Lab Module Organizer (Blank)
worksheet/handoutPosted in Schoology
Open in Schoology

Open this when the class reaches this activity and use it to complete the required lesson artifact.

Placement rationale

Matched Molecular biology and cloning by path:Biomedical-Innovations/Problem-6_Molecular-Biology/6.1_Molecular-Biology; keywords:, cloning. Score 142. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

Catch-up / reteachFor: Need extra support
BI 6.1.2 Cloning Module 1 Ligation Overview
worksheet/handoutPosted in Schoology
Open in Schoology

Use this if you were absent, got stuck, or need another pass before you submit the lesson artifact.

Placement rationale

Matched Molecular biology and cloning by path:Biomedical-Innovations/Problem-6_Molecular-Biology/6.1_Molecular-Biology; keywords:, cloning. Score 142. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

How to get there: open Clever and sign in with your Microsoft (district) account. Both myPLTW and Schoology are in Clever. Do the activity in myPLTW. Turn the work in on this site or hand it to Mr. Mendoza, because that is the step that counts as submitted. Schoology only shows your report-card grade later.

Aligned to

Standards this week

Biotechnology for Health and Disease 072125 · 5.4 Bio-Molecular Technology
Biotechnology for Health and Disease 072125 · 5.5 Laboratory SOPs
Check yourself

WebXam practice

Tap an answer to check it · nothing is recorded or graded
A lab assistant notices the calcium chloride for a bacterial transformation experiment expired three months ago but looks clear. What should they do?
You plate E. coli and notice a second, unexpected species grew after 24 hours. What most likely explains this?
You are plating bacteria for a transformation. When holding the plate, what should you wear to avoid contaminating the sample?
In which storage cabinet should you keep the rubbing (isopropyl) alcohol used to sterilize a molecular biology bench?