Semester 1 (Fall) · Week 11 of 18 teaching weeksOct 16–20

PCR, restriction enzymes, electrophoresis, microarrays, and the limits of each method.

Your PLTW coursework: Medical InterventionsUnit 2: How to Screen What is In Your Genes ▸ Lesson 2.1 Genetic Testing and Screening ▸ "Activity 2.1.2 Copying Our Genes"

What to do if absent
Color keyLearn firstGet orientedDo the workLab daySafety netCheck yourself
Portal terms
CER:
Claim, Evidence, Reasoning: make a claim, back it with evidence, explain your reasoning.
SOP:
Standard Operating Procedure, the exact steps to follow (especially in a lab).
Tracker:
Your PLTW progress log where you record completed evidence.
myPLTW:
The PLTW course site where you do the online activities. Find it in Clever with your Microsoft sign-in, right next to Schoology.
Learn first

Week overview - From Sample to Bands: Comparing Testing Methods

Oct 16–20

Compare PCR, , and microarrays, then read a gel to decide which sample carries a disease marker.

Week arc
  1. 1Watch the Khan Academy PCR and gel clip in the PLTW course shell and jot the goal of each method in your own words.
  2. 2Put on goggles and gloves, then load your provided dye samples into the gel wells using a micropipette.
  3. 3Run the gel at the set voltage and watch which direction the colored fronts move from the wells.
  4. 4While it runs, sketch a table comparing PCR, restriction enzymes, and microarrays with one strength and one limit each.
  5. 5After staining, measure how far each band traveled and rank the fragments from largest to smallest.
  6. 6Decide which lane matches the disease marker and write one sentence of evidence using the word banding.
By week end
  • You'll be able to load and run an gel safely.
  • You'll be able to explain why smaller DNA fragments travel farther on a gel.
  • You'll be able to choose the right method for a given testing question.
The plan

Daily lessons this week

Open any day for its full lesson, the work due that day, and guided notes.

FridayFri, Oct 16
Access-to-results debate

One CER on direct patient access to raw genetic results plus a reflection naming one counterargument.

MondayMon, Oct 19
PCR and primers

Labeled PCR diagram showing all three steps with temperatures, binding sites, cut, and one bridging sentence to .

TuesdayTue, Oct 20
Gel electrophoresis lab

Gel banding with distances, largest-to-smallest ranking, two size estimates against the ladder, and an explanation of the size-migration relationship.

Thursday
Microarray introduction

Three-row method comparison table (PCR, gel, ) plus one sentence on a microarray limit not shared by the other two methods.

Friday
Methods quiz

Completed methods quiz plus a one-sentence correction for one missed or uncertain item.

Get oriented

Quick intro to the week

  • Today matters because every clinic test you have heard of starts with copying or sorting DNA, and you will do both.
  • Goal for today: run a real gel and read the banding pattern like a lab technician would.
  • From Monday's debate, keep asking who gets access to test results once a method makes them easy to produce.
  • Upload your gel sketch and method-comparison table to the class site, where the grade is recorded.
Do the work

Your PLTW coursework this week

Do this: Advance the Unit 2 testing-methods benchmark by submitting your gel banding interpretation on the class site.

Know when done
  • PCR uses primers to copy a target stretch of DNA many times.
  • sorts DNA by size, with smaller fragments traveling farther.
  • Microarrays use to detect many markers at once.
Be able to do
  • Read a gel banding pattern to compare fragment sizes.
  • Match a testing method to the question it best answers.

📋 Tracker evidence due this week: your gel banding interpretation and method-comparison table posted in the PLTW course shell.

All PLTW activities are completed inside the PLTW course environment: this page only gives direction.

The plan

This week's PLTW tracker

Your week at a glance. Check off each deliverable as you finish it, then submit so Mr. Mendoza can see how the class is pacing.

Use the code Mr. Mendoza gave you, not your name. Saved on this device.

DayDateFocusKey deliverable
FridayFri, Oct 16Access-to-results debate One CER on direct patient access to raw genetic results plus a reflection naming one counterargument.
MondayMon, Oct 19PCR and primers Labeled PCR diagram showing all three steps with temperatures, primer binding sites, restriction enzyme cut, and one bridging sentence to gel electrophoresis.
TuesdayTue, Oct 20Gel electrophoresis lab Gel banding data table with migration distances, largest-to-smallest ranking, two size estimates against the ladder, and an explanation of the size-migration relationship.
Thursday-Microarray introductionThree-row method comparison table (PCR, gel, microarray) plus one sentence on a microarray limit not shared by the other two methods.
Friday-Methods quizCompleted methods quiz plus a one-sentence correction for one missed or uncertain item.
Check off as you finish
  • M: access-to-results debate
  • T: PCR diagram
  • W: gel practice
  • Th: microarray intro
  • F: methods quiz

Due by week's end: Genetic testing methods quiz.

Where are you this week?0/5 checked
Pick your period and code first.
The week, drawn

5 panels from the illustrated semester.

Fiction. There is no such student. The lessons, labs and dates are the real planned course; the student, the classmates and the conversations are invented.

Lab day

Lab day: what to bring & watch

Equipment you'll need
Agarose gel and casting trayGel electrophoresis chamber with power supplyMicropipette and tipsLoading dye and DNA size ladderTAE or TBE running bufferSafety goggles and nitrile gloves
Genetic Science Learning Center: Gel Electrophoresis

This explainer accompanies the PLTW lab protocol: watch it before lab.

Safety net

What to do when absent

If YOU are absent

Most days, this class is your PLTW coursework: and PLTW is online and individual. So being out usually just means doing exactly what we did in class, from home.

Open Clever, then myPLTW

How to get there: open Clever and sign in with your Microsoft (district) account. Both myPLTW and Schoology are in Clever. Do the activity in myPLTW. Turn the work in on this site or hand it to Mr. Mendoza, because that is the step that counts as submitted. Schoology only shows your report-card grade later.

Was today a lab or a group activity?

You can't do those from home: do this instead: Khan PCR / gel plus banding interpretation.

If MR. MENDOZA is absent

Class still runs. A substitute will post today's plan: complete the online activity above; it's built to be self-guided. Need the concept taught without a teacher? Use this authoritative explainer:

Genetic Science Learning Center: Gel Electrophoresis
Words

Vocabulary

primerrestriction enzymegel electrophoresismicroarrayhybridizationmarker
Explore

Teacher-posted resources

Classroom documents for this lesson are posted in Schoology. Open Clever, then Schoology, and find each one by the name shown on its card.

Use during lessonFor: Everyone
MI 2.1.2 PCR Lab Group Assignment & Protocol Guide
worksheet/handoutPosted in Schoology
Open in Schoology

Open this when the class reaches this activity and use it to complete the required lesson artifact.

Placement rationale

Matched PCR, , microarrays by path:Medical-Interventions/Unit-2_How-to-Screen-Your-Genes/2.1_Genetic-Testing-and-Screening; keywords:pcr, gel electrophoresis. Score 142. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

Catch-up / reteachFor: Need extra support
MI Unit 2 Student Review: Genetic Disorders & Gel Electrophoresis
worksheet/handoutPosted in Schoology
Open in Schoology

Use this if you were absent, got stuck, or need another pass before you submit the lesson artifact.

Placement rationale

Matched PCR, , microarrays by path:Medical-Interventions/Unit-2_How-to-Screen-Your-Genes/00_Unit-Overview; keywords:pcr, gel electrophoresis. Score 138. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

Extension / challengeFor: Ready to go deeper
MI Activity 2.1.4 Genetic Testing (Optional)
worksheet/handoutPosted in Schoology
Open in Schoology

Use this after the required lesson work when you are ready for a harder application or a deeper connection.

Placement rationale

Matched PCR, , microarrays by path:Medical-Interventions/Unit-2_How-to-Screen-Your-Genes/2.1_Genetic-Testing-and-Screening; keywords:gel electrophoresis. Score 134. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

How to get there: open Clever and sign in with your Microsoft (district) account. Both myPLTW and Schoology are in Clever. Do the activity in myPLTW. Turn the work in on this site or hand it to Mr. Mendoza, because that is the step that counts as submitted. Schoology only shows your report-card grade later.

Aligned to

Standards this week

Genetics of Disease 072130 · 5.4 Bio-Molecular Technology
Genetics of Disease 072130 · 5.5 Laboratory SOPs
Check yourself

WebXam practice

Tap an answer to check it · nothing is recorded or graded
How many primers are required for a standard polymerase chain reaction (PCR)?
What is the correct order of the three steps of one PCR cycle?
In gel electrophoresis, a set of DNA fragments of known sizes used as a size reference for the unknown samples is called a
Restriction enzymes are used in genetic testing because they