Thu, Mar 18, 2027Spring (Semester 2) · Week 9Day 41 of 6780-min block

PCR and primers

Today's target

Diagram the steps of PCR and explain how primers and restriction enzymes target specific DNA.

Due today · Notebook check Required

Labeled PCR diagram showing all three steps with temperatures, primer binding sites, restriction enzyme cut, and one bridging sentence to gel electrophoresis.

Your 4 steps today
  1. 1
    Do this
    Diagram the steps of PCR and explain how primers and restriction enzymes target specific DNA.
  2. 2
  3. 3
    Submit this
    Notebook check: Labeled PCR diagram showing all three steps with temperatures, primer binding sites, restriction enzyme cut, and one bridging sentence to gel electrophoresis.
  4. 4
    Submit it here
    1. 1CMSD website. Go to clevelandmetroschools.org and click the Clever button.
    2. 2Clever. Clever opens. Sign in if it asks.
    3. 3Microsoft (district) login. Use your district Microsoft account (the one for school).
    4. 4Schoology. Open Schoology, then your class, then Assignments, and find the file named below.
    The file to submit is named: Genetics of Disease (Medical Interventions) › PCR, restriction enzymes, electrophoresis, microarrays, and the limits of each method. › Notebook check
    Open Schoology
Were you absent? Jump to the make-up plan
Where this fits
Tested on (Ohio WebXam)
Genetics of Disease · 072130
PLTW lesson
MI · PCR and primers
WebXam domain
Bio-Molecular Technology
Evidence to produce
Notebook check
Lab / skill
Genetic Science Learning Center: Gel Electrophoresis
Quick glossary
CER:
Claim, Evidence, Reasoning — make a claim, back it with evidence, explain your reasoning.
SOP:
Standard Operating Procedure — the exact steps to follow (especially in a lab).
Tracker:
Your PLTW progress log where you record completed evidence.
myPLTW:
The PLTW course site where you do the online activities — you open it through Schoology.
Learn first

Minute-by-minute · 80-minute block

💡 Big idea: How does PCR act as a molecular photocopier that makes one target sequence readable amid billions of others?

  1. 0-8Hook: crime-scene scenario; introduce PCR as molecular amplification
  2. 8-25Draw and label three PCR steps with temperatures
  3. 25-45Add primers to diagram; explain why sequence controls what is copied
  4. 45-60Add restriction enzyme cut site and recognition sequence note
  5. 60-72Write one sentence connecting PCR output to gel input
  6. 72-80Submit diagram; preview Wednesday gel lab supplies and safety
Mr. Mendoza's 5-minute intro
  • Hook: Ask: if a crime scene has one cell, and you need a million copies to run any test, what do you do?
  • Why it matters: PCR is the foundation of COVID testing, forensic DNA analysis, and the gel work you do tomorrow.
  • Today's work: You build the diagram so you can use it as a reference when interpreting gel bands Wednesday.
  • Exit goal: Fully labeled PCR diagram submitted before the bell.
Do this, step by step
  1. 1Draw the three PCR steps, denaturation, annealing, and extension, and label the temperature of each.
  2. 2Show where two primers bind and explain why their sequence determines what gets copied.
  3. 3Add a note on how a restriction enzyme cuts DNA at a specific recognition site.
  4. 4Write one sentence on why PCR is needed before you can run a gel.
  5. 5Submit your labeled PCR diagram as your daily evidence.
You'll be able to
  • You'll be able to diagram and label the three steps of PCR.
  • You'll be able to explain how primers and restriction enzymes target specific sequences.
Know by the end
  • PCR steps: denaturation (~95 C separates strands), annealing (~55-65 C primers bind), extension (~72 C Taq adds nucleotides).
  • Primers are short single-stranded sequences complementary to the flanking regions of the target; only the region between them is copied.
  • Restriction enzymes cut double-stranded DNA at specific palindromic recognition sequences, producing fragments of defined size.
📺 Tutor me: Khan Academy: polymerase chain reaction (PCR)
Do the work

Your PLTW work today

Open this PLTW section today

PCR, restriction enzymes, electrophoresis, microarrays, and the limits of each method. · PCR and primers

Day 2 of this lesson. Open this exact section in myPLTW (reached through Schoology), then do the work below.

Do this: Open Activity 2.1.2 Copying Our Genes in myPLTW and build your labeled PCR diagram showing all three steps.

Complete

Mark the PCR activity complete after your diagram is submitted.

How far to get

Monday debate should be posted; PCR diagram due today.

Upload as evidence

Labeled PCR diagram with all three steps, temperatures, primer sites, and restriction enzyme cut submitted.

All PLTW activities are completed inside the PLTW course environment — this page only gives direction. Submit producibles on Schoology.

The plan

Today's PLTW tracker

Check things off as you work, then submit. This tells Mr. Mendoza how you're doing so he can help the class. It does not replace turning in your producible on Schoology.

Use the code Mr. Mendoza gave you, not your name. Saved on this device.

PCR, restriction enzymes, electrophoresis, microarrays, and the limits of each method.Day 2 of this projectSee the full week plan
Today's PLTW target

PCR, restriction enzymes, electrophoresis, microarrays, and the limits of each method. · PCR and primers

Open Activity 2.1.2 Copying Our Genes in myPLTW and build your labeled PCR diagram showing all three steps.

Monday debate should be posted; PCR diagram due today.

This is how Mr. Mendoza sees the class keeping pace with PLTW. Be honest, it only helps if it is accurate.

1 · What you do today

🎯 Diagram the steps of PCR and explain how primers and restriction enzymes target specific DNA.

  • Draw the three PCR steps, denaturation, annealing, and extension, and label the temperature of each.
  • Show where two primers bind and explain why their sequence determines what gets copied.
  • Add a note on how a restriction enzyme cuts DNA at a specific recognition site.
  • Write one sentence on why PCR is needed before you can run a gel.
  • Submit your labeled PCR diagram as your daily evidence.
2 · Turn in today

Notebook check: Labeled PCR diagram showing all three steps with temperatures, primer binding sites, restriction enzyme cut, and one bridging sentence to gel electrophoresis.

Submit on Schoology

Upload by 11:29 PM for full credit.

3 · Who's doing what (team)
TaskWho
Draw the three PCR steps, denaturation, annealing, and extension, and label the temperature of each._______
Show where two primers bind and explain why their sequence determines what gets copied._______
Add a note on how a restriction enzyme cuts DNA at a specific recognition site._______
Write one sentence on why PCR is needed before you can run a gel._______
Submit your labeled PCR diagram as your daily evidence._______

Working solo? Put your own name in "Who" for every row.

4 · Words I can use correctly
5 · I'm successful today when I can…
  • You'll be able to diagram and label the three steps of PCR.
  • You'll be able to explain how primers and restriction enzymes target specific sequences.
6 · Reflection & next steps
Where are you today?0/7 checked
Pick your period and code first.
Explore

Teacher-posted resources

Classroom documents for this lesson. Ones marked “Open the file” open right here; the rest are posted in Schoology. Use the label on each card to choose the right move.

Use during lessonFor: Everyone
MI 2.1.2 PCR Lab Group Assignment & Protocol Guide
worksheet/handoutOpens here
Open the file

Open this when the class reaches this activity and use it to complete the required lesson artifact.

Placement rationale

Matched PCR, gel electrophoresis, microarrays by path:Medical-Interventions/Unit-2_How-to-Screen-Your-Genes/2.1_Genetic-Testing-and-Screening; keywords:pcr, gel electrophoresis. Score 142. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

Catch-up / reteachFor: Need extra support
MI Unit 2 Student Review: Genetic Disorders & Gel Electrophoresis
worksheet/handoutOpens here
Open the file

Use this if you were absent, got stuck, or need another pass before you submit the lesson artifact.

Placement rationale

Matched PCR, gel electrophoresis, microarrays by path:Medical-Interventions/Unit-2_How-to-Screen-Your-Genes/00_Unit-Overview; keywords:pcr, gel electrophoresis. Score 138. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

Extension / challengeFor: Ready to go deeper
MI Activity 2.1.4 Genetic Testing (Optional)
worksheet/handoutOpens here
Open the file

Use this after the required lesson work when you are ready for a harder application or a deeper connection.

Placement rationale

Matched PCR, gel electrophoresis, microarrays by path:Medical-Interventions/Unit-2_How-to-Screen-Your-Genes/2.1_Genetic-Testing-and-Screening; keywords:gel electrophoresis. Score 134. Visibility: student-schoology (student-facing resource; link through Schoology rather than local path).

How to get there: open the CMSD website, click Clever, sign in with your Microsoft (district) account, then open Schoology from Clever.

Lab day

Lab & supplies

Bring / set up
Agarose gel and casting trayGel electrophoresis chamber with power supplyMicropipette and tipsLoading dye and DNA size ladderTAE or TBE running bufferSafety goggles and nitrile gloves
Genetic Science Learning Center: Gel Electrophoresis
Words

This unit's vocabulary

primerrestriction enzymegel electrophoresismicroarray/MY-kroh-uh-ray/hybridizationmarker

Tap the speaker to hear a term. Weekly vocabulary task: add two of these terms to your notebook glossary with a definition and an example in your own words.

Check yourself

WebXam practice

Tap an answer to check it · nothing is recorded or graded
How many primers are required for a standard polymerase chain reaction (PCR)?
What is the correct order of the three steps of one PCR cycle?
In gel electrophoresis, a set of DNA fragments of known sizes used as a size reference for the unknown samples is called a
Restriction enzymes are used in genetic testing because they
Check yourself

Cumulative WebXam review

A quick mixed-review pulling questions from earlier units plus today, so the WebXam material stays fresh.

Tap an answer to check it · nothing is recorded or graded
[Review: Growing the evidence: aseptic culturing and superbug data] A single random mutation gives one bacterium a stronger cell wall that resists an antibiotic. How does this lead to a resistant infection?
[Review: Sound and shields: audiograms, the immune response, and vaccines] A vaccination works by activating the immune system so that a specialized cell can rapidly make antibodies on future exposure. What is that long-lasting cell called?
[Review: Reading the Family Tree: Genetic Testing Launch] A single nucleotide polymorphism (SNP) is best described as which of the following?
How many primers are required for a standard polymerase chain reaction (PCR)?
Explore

Where this leads — careers

What today's skills lead to. These are real health-science careers this course builds toward. Tap one to see, on the US Department of Labor's O*NET site, what the job actually involves, what it pays, and how fast it is growing.

Safety net

What to do if you were absent

If YOU are absent

Today is individual PLTW work, so do exactly what we did in class, from home: complete the same PLTW target above, then submit your Notebook check.

Open Schoology (CMSD) and keep going

How to get there: open the CMSD website, click Clever, sign in with your Microsoft (district) account, then open Schoology from Clever.

If MR. MENDOZA is absent

Class still runs. Complete the online activity above (it's self-guided). Need the concept taught without a teacher? Use this authoritative explainer:

Genetic Science Learning Center: Gel Electrophoresis
Explore

Optional extra credit (async)

You've passed Unit 2, so the optional extra-credit track is open. Complete reserved-unit work from home (virtual labs included) for extra credit, all submitted on Schoology.

Open the extra-credit track
How this is graded
For: Notebook check — Labeled PCR diagram showing all three steps with temperatures, primer binding sites, restriction enzyme cut, and one bridging sentence to gel electrophoresis.
  • Complete
    Every required part of the artifact is present, nothing left blank.
  • Accurate
    The science and the data are correct and match the evidence.
  • Scientific reasoning
    You explain your claim with evidence and reasoning (CER), not just an answer.
  • Professional communication
    Clear, organized, labeled, and written the way a clinician or scientist would.
  • Submitted
    Turned in the right way (Schoology for routine work) and confirmed.
Submission Zone

Drop your Thu, Mar 18, 2027 · PCR and primers here. Use a clear file name (your initials + project). Routine work still goes to Schoology (via the CMSD portal).

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